Stem-loop tca-mir-193

Accession

MI0016396

Description

Tribolium castaneum tca-mir-193 precursor miRNA

Literature search

1 open access papers mention tca-mir-193
(1 sentences)

Sequence

gcaaacuggucguaaugguuUGGGCCUUAUAGGUUCAGUUGaucauuuuuaaagcUACUGGCCUGUUAAGUCCCAAGUuauuacauugccggaagcu
((...(((((.(((((((((((((.(((((((((.((((.................))))))))).)))).)))))))))))))...)))))..)).

Structure

-  aaa     --c             C    -     U    UGaucau 
 gc   cuggu   guaaugguuUGGG CUUA UAGGU CAGU       u
 ||   |||||   ||||||||||||| |||| ||||| ||||       u
 cg   ggccg   cauuauUGAACCC GAAU GUCCG GUCA       u
u  -aa     uua             U    U     -    Ucgaaau 

Annotation confidence Not enough data

Genome context

ChLG8: 4707070-4707166 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-193

Mature tca-miR-193-5p

• Accession: MIMAT0018896
• Description: Tribolium castaneum tca-miR-193-5p mature miRNA
• Sequence: 21 - UGGGCCUUAUAGGUUCAGUUG - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-193-3p

• Accession: MIMAT0018897
• Description: Tribolium castaneum tca-miR-193-3p mature miRNA
• Sequence: 56 - UACUGGCCUGUUAAGUCCCAAGU - 78
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696