Stem-loop tca-mir-279e

Accession

MI0016356

Description

Tribolium castaneum tca-mir-279e precursor miRNA

Literature search

2 open access papers mention tca-mir-279e
(8 sentences)

Sequence

cgguggagcucucgguguaaGCCAGUGUUCAGUCUAUUGUUUCAcauugguuucgauugUGACUAGAUCGAACACUCGCUUGCaaccuggguuug
.....((((((..(((((((((.(((((((.(((((.....((((((((....))).))))).))))).))))))).)))))).))).)))))).

Structure

cggug      uc   -      C       A     UUGUU     -   g 
     gagcuc  ggu guaaGC AGUGUUC GUCUA     UCAca uug u
     ||||||  ||| |||||| ||||||| |||||     ||||| |||  
     uuuggg  cca CGUUCG UCACAAG UAGAU     AGUgu agc u
----g      -u   a      C       C     ----C     u   u 

Annotation confidence Low

Genome context

ChLG9: 11200-11294 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-279e

Mature tca-miR-279e-5p

• Accession: MIMAT0018816
• Description: Tribolium castaneum tca-miR-279e-5p mature miRNA
• Sequence: 21 - GCCAGUGUUCAGUCUAUUGUUUCA - 44
• Evidence: experimental ; SOLID [1]

Mature tca-miR-279e-3p

• Accession: MIMAT0018817
• Description: Tribolium castaneum tca-miR-279e-3p mature miRNA
• Sequence: 60 - UGACUAGAUCGAACACUCGCUUGC - 83
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696