Stem-loop tca-mir-29

Accession

MI0016349

Description

Tribolium castaneum tca-mir-29 precursor miRNA

Literature search

2 open access papers mention tca-mir-29
(2 sentences)

Sequence

uuugugguggaacaauaguuguaggauuuggcuuugggcACUGUUUUCGUGUGGUGGUGAGauuuuauuuugauucUAGCACCAUAUGAAAUCAGUUCuuguaccaaauaccagcgaaauacaccaagug
....(((((.........((((.((((((((....(((.((((.((((((((((((.((.((((.......)))).)).)))))))))))).)))))))....)))))).)).))))....)))))....

Structure

uuug     gaacaauag    a  -      cuuu   c    U            G  A    uu 
    uggug         uugu gg auuugg    ggg ACUG UUUCGUGUGGUG UG Gauu  a
    |||||         |||| || ||||||    ||| |||| |||||||||||| || ||||  u
    accac         agcg cc uaaacc    uCU UGAC AAAGUAUACCAC AU uuag  u
guga     -----auaa    a  a      augu   -    U            G  c    uu 

Annotation confidence Not enough data

Genome context

ChLG9: 2711697-2711826 [+]

Mature tca-miR-29-5p

• Accession: MIMAT0018802
• Description: Tribolium castaneum tca-miR-29-5p mature miRNA
• Sequence: 40 - ACUGUUUUCGUGUGGUGGUGAG - 61
• Evidence: experimental ; SOLID [1]

Mature tca-miR-29-3p

• Accession: MIMAT0018803
• Description: Tribolium castaneum tca-miR-29-3p mature miRNA
• Sequence: 77 - UAGCACCAUAUGAAAUCAGUUC - 98
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696