Stem-loop tca-mir-279d

Accession

MI0016342

Description

Tribolium castaneum tca-mir-279d precursor miRNA

Literature search

2 open access papers mention tca-mir-279d
(8 sentences)

Sequence

aucaagaguggccccaaaaaccaaugaaaacacuguguUGGCGAUUGUGGGUUUAGUCCACGuuuuaguaaaccgUGACUAGAUCCAUACUCGUCUAUAGagguuuuuagcacgacuugggccccacaagccaacuccucca
.....((((((((((((.......(((((((.((.(((.(((((.(((((((((((((.((((((....))).)))))))))))))))).))))).))).))))))))).......)))))........))).)))).....

Structure

aucaa    -   --------     aaaccaa       a  g   U     U             C   -   u 
     gagu ggc        cccaa       ugaaaac cu ugu GGCGA UGUGGGUUUAGUC ACG uuu a
     |||| |||        |||||       ||||||| || ||| ||||| ||||||||||||| ||| |||  
     cuca ccg        ggguu       auuuuug ga AUA CUGCU AUACCUAGAUCAG Ugc aaa g
accuc    a   aacacccc     cagcacg       -  G   U     C             -   c   u 

Annotation confidence Low

Genome context

ChLG7: 7543987-7544128 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-279d

Mature tca-miR-279d-5p

• Accession: MIMAT0018788
• Description: Tribolium castaneum tca-miR-279d-5p mature miRNA
• Sequence: 39 - UGGCGAUUGUGGGUUUAGUCCACG - 62
• Evidence: experimental ; SOLID [1]

Mature tca-miR-279d-3p

• Accession: MIMAT0018789
• Description: Tribolium castaneum tca-miR-279d-3p mature miRNA
• Sequence: 76 - UGACUAGAUCCAUACUCGUCUAUAG - 100
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696