Stem-loop tca-mir-3049

Accession

MI0016336

Description

Tribolium castaneum tca-mir-3049 precursor miRNA

Literature search

1 open access papers mention tca-mir-3049
(2 sentences)

Sequence

augugguggaacgauacgauggugagugggggcgcagggacaugggggcgccacauggggUCGGGAAGACAGUUGCGGCGGAuuucguuuuuucaagUCCGUUCGCUGCAUUCCCagcccggugucgugccgaggcagcaagggggcgcucaggcuaggagguuguuuaca
.....(((.((((((....((((...((((.((.(.......((..(((((.((((.((((.(((((..((((...(((((((((.(......)))))))))).))))..))))).)))).)))).)))))....))......).)).)))).))))....))))))))).

Structure

augug   g      acga    gag    g  g agggaca  --gg     c    g    C     GA    UGC         c uu 
     gug aacgau    uggu   uggg gc c       ug    ggcgc acau gggU GGGAA  CAGU   GGCGGAuuu g  u
     ||| ||||||    ||||   |||| || |       ||    ||||| |||| |||| |||||  ||||   ||||||||| |   
     cau uuguug    aucg   acuc cg g       ac    ccgug ugug cccg CCCUU  GUCG   UUGCCUgaa c  u
----a   -      gagg    --g    g  g -ggaacg  ggag     c    g    a     AC    --C         - uu 

Annotation confidence Not enough data

Genome context

ChLG6: 4999022-4999192 [+]

Mature tca-miR-3049-5p

• Accession: MIMAT0018776
• Description: Tribolium castaneum tca-miR-3049-5p mature miRNA
• Sequence: 61 - UCGGGAAGACAGUUGCGGCGGA - 82
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3049-3p

• Accession: MIMAT0018777
• Description: Tribolium castaneum tca-miR-3049-3p mature miRNA
• Sequence: 98 - UCCGUUCGCUGCAUUCCC - 115
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696