Stem-loop tca-mir-309a

Accession

MI0016322

Description

Tribolium castaneum tca-mir-309a precursor miRNA

Literature search

2 open access papers mention tca-mir-309a
(15 sentences)

Sequence

aaaacgcuaaucuguuAGAUGAACUCGACUCGGCUgaugauaaaaaaaacaUCACUGGGUUCAGUUUGUCCAAUGguuuuagcuaaaa
.....(((((.(((((.((((((((.(((((((.(((((..........)))))))))))).)))))))).)))))..))))).....

Structure

aaaac     -u     A        C       C     auaa 
     gcuaa  cuguu GAUGAACU GACUCGG Ugaug    a
     |||||  ||||| |||||||| ||||||| |||||     
     cgauu  gGUAA CUGUUUGA UUGGGUC ACUac    a
aaaau     uu     C        C       -     aaaa 

Annotation confidence Not enough data

Genome context

ChLG5: 7174273-7174360 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-309a

Mature tca-miR-309a-5p

• Accession: MIMAT0018750
• Description: Tribolium castaneum tca-miR-309a-5p mature miRNA
• Sequence: 17 - AGAUGAACUCGACUCGGCU - 35
• Evidence: experimental ; SOLID [1]

Mature tca-miR-309a-3p

• Accession: MIMAT0018751
• Description: Tribolium castaneum tca-miR-309a-3p mature miRNA
• Sequence: 52 - UCACUGGGUUCAGUUUGUCCAAUG - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696