Stem-loop tca-mir-3848

Accession

MI0016319

Description

Tribolium castaneum tca-mir-3848 precursor miRNA

Sequence

uauuauccgcucuauGUAGCGGUAUAUAAGGUUAgcgcgcugaccgcgugUUACCCACUUAAUGUGCUUAcauuggaaggaaauu
.....(((..((((((((..(((((((.((((((((((((.....))))))))...)))).))))))))))).)))).)))....

Structure

uauua   gc    -    GC       A    ---        u 
     ucc  ucua uGUA  GGUAUAU AGGU   UAgcgcgc g
     |||  |||| ||||  ||||||| ||||   |||||||| a
     agg  aggu acAU  UCGUGUA UUCA   AUUgugcg c
-uuaa   -a    u    --       A    CCC        c 

Annotation confidence Not enough data

Genome context

ChLG3: 6918155-6918239 [-]

Mature tca-miR-3848-5p

• Accession: MIMAT0018744
• Description: Tribolium castaneum tca-miR-3848-5p mature miRNA
• Sequence: 16 - GUAGCGGUAUAUAAGGUUA - 34
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3848-3p

• Accession: MIMAT0018745
• Description: Tribolium castaneum tca-miR-3848-3p mature miRNA
• Sequence: 51 - UUACCCACUUAAUGUGCUUA - 70
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696