Stem-loop tca-mir-3846

Accession

MI0016317

Description

Tribolium castaneum tca-mir-3846 precursor miRNA

Sequence

ggaauagaguuacuuccauugaugauaguaaaUGUUCUUGGCUUAUAAGUCUUUGUGUcaagaauauUGACCACAAUUACGUUGCCUCAaucaucgacgucaucaacugacauggcaacuaauucuccaau
(((...((((((.(((((((((((((.((..(((.....(((......((..(((((((((.....)))).)))))..))...))).....)))..)))))))))......)))).)).)))))))))...

Structure

---   aua      c  -    ------       a  aa   UUCUU   UUAUAA  CU     -    g 
   gga   gaguua uu ccau      ugaugau gu  aUG     GGC      GU  UUGUG Ucaa a
   |||   |||||| || ||||      ||||||| ||  |||     |||      ||  ||||| |||| a
   ccu   cuuaau aa ggua      acuacug ca  uac     CCG      CA  AACAC AGUu u
uaa   ---      c  c    caguca       -  gc   uaACU   ---UUG  UU     C    a 

Annotation confidence Not enough data

Genome context

ChLG3: 15911874-15912004 [-]

Mature tca-miR-3846-5p

• Accession: MIMAT0018740
• Description: Tribolium castaneum tca-miR-3846-5p mature miRNA
• Sequence: 33 - UGUUCUUGGCUUAUAAGUCUUUGUGU - 58
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3846-3p

• Accession: MIMAT0018741
• Description: Tribolium castaneum tca-miR-3846-3p mature miRNA
• Sequence: 68 - UGACCACAAUUACGUUGCCUCA - 89
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696