Stem-loop tca-mir-3477

Accession

MI0016315

Description

Tribolium castaneum tca-mir-3477 precursor miRNA

Sequence

ugcacgcuugacugcguuucguUAAUCUCAUUUGGUAACUGUGAGGuuuguuuauuccUCAGACUACUGAAUGGGAUCGACaaaaugugguuuuguuuuca
.....((..((((((((((.(((.(((((((((((((..(.(((((..........))))).).))))))))))))).))).))))))))))..)).....

Structure

ugcac  uu          c   A             AC G     uuug 
     gc  gacugcguuu guU AUCUCAUUUGGUA  U UGAGG    u
     ||  |||||||||| ||| |||||||||||||  | |||||     
     ug  uugguguaaa CAG UAGGGUAAGUCAU  A ACUcc    u
acuuu  uu          a   C             -C G     uuau 

Annotation confidence Not enough data

Genome context

ChLG3: 19663710-19663810 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-3477

Mature tca-miR-3477-5p

• Accession: MIMAT0018736
• Description: Tribolium castaneum tca-miR-3477-5p mature miRNA
• Sequence: 23 - UAAUCUCAUUUGGUAACUGUGAGG - 46
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3477-3p

• Accession: MIMAT0018737
• Description: Tribolium castaneum tca-miR-3477-3p mature miRNA
• Sequence: 59 - UCAGACUACUGAAUGGGAUCGAC - 81
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696