Stem-loop tca-mir-3825

Accession

MI0016286

Description

Tribolium castaneum tca-mir-3825 precursor miRNA

Sequence

aaaauguuuuggugaagauuUGUUUUCUUCUUCUGCACUAUUUuauacuuaaaaaACCGUGCGGAGAAGACAACAAGucuuuaacaaaauucuuc
.....((((((..(((((((((((.((((((.((((((..((((........))))..)))))))))))).)))))))))))..)))))).....

Structure

aaaau      gu           U      U      UA    aua 
     guuuug  gaagauuUGUU UCUUCU CUGCAC  UUUu   c
     ||||||  ||||||||||| |||||| ||||||  ||||    
     uaaaac  uuucuGAACAA AGAAGA GGCGUG  Aaaa   u
cuucu      aa           C      -      CC    aau 

Annotation confidence Not enough data

Genome context

ChLGX: 5796077-5796171 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from tca-mir-3825

Mature tca-miR-3825-5p

• Accession: MIMAT0018678
• Description: Tribolium castaneum tca-miR-3825-5p mature miRNA
• Sequence: 21 - UGUUUUCUUCUUCUGCACUAUUU - 43
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3825-3p

• Accession: MIMAT0018679
• Description: Tribolium castaneum tca-miR-3825-3p mature miRNA
• Sequence: 56 - ACCGUGCGGAGAAGACAACAAG - 77
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696