Stem-loop tca-mir-3815

Accession

MI0016273

Description

Tribolium castaneum tca-mir-3815 precursor miRNA

Sequence

547 reads, 12.0 reads per million, 24 experiments

gaaaaaauuauuugcgauUGGGGGUAGGAUGCUCAAAUGUUuguguuuaauuaaacUUAUGAGUCCUUCUAACCUCaguuguaaauaauugcuau
.....((((((((((((((((((.(((((.(((((...(((((........)))))...)))))..))))).)))))))))))))))))).....

Structure

gaaaa                  G     -U     AAU     ugu 
     aauuauuugcgauUGGGG UAGGA  GCUCA   GUUug   u
     |||||||||||||||||| |||||  |||||   |||||    
     uuaauaaauguugaCUCC AUCUU  UGAGU   caaau   u
uaucg                  A     CC     AUU     uaa 

Annotation confidence Medium

Genome context

ref|NC_007416.3|: 6593904-6593998 [+]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-3815

Mature tca-miR-3815-5p

• Accession: MIMAT0018654
• Description: Tribolium castaneum tca-miR-3815-5p mature miRNA
• Sequence: 19 - UGGGGGUAGGAUGCUCAAAUGUU - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3815-3p

• Accession: MIMAT0018655
• Description: Tribolium castaneum tca-miR-3815-3p mature miRNA
• Sequence: 57 - UUAUGAGUCCUUCUAACCUC - 76
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696