Stem-loop tca-mir-3815

Accession

MI0016273

Description

Tribolium castaneum tca-mir-3815 precursor miRNA

Sequence

gaaaaaauuauuugcgauUGGGGGUAGGAUGCUCAAAUGUuuguguuuaauuaaacUUAUGAGUCCUUCUAACCUCAGUUGuaaauaauugcuau
.....((((((((((((((((((.(((((.(((((...(((((........)))))...)))))..))))).)))))))))))))))))).....

Structure

gaaaa                  G     -U     AAU     ugu 
     aauuauuugcgauUGGGG UAGGA  GCUCA   GUuug   u
     |||||||||||||||||| |||||  |||||   |||||    
     uuaauaaauGUUGACUCC AUCUU  UGAGU   caaau   u
uaucg                  A     CC     AUU     uaa 

Annotation confidence Not enough data

Genome context

ChLGX: 5788162-5788256 [-]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-3815

Mature tca-miR-3815-5p

• Accession: MIMAT0018654
• Description: Tribolium castaneum tca-miR-3815-5p mature miRNA
• Sequence: 19 - UGGGGGUAGGAUGCUCAAAUGU - 40
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3815-3p

• Accession: MIMAT0018655
• Description: Tribolium castaneum tca-miR-3815-3p mature miRNA
• Sequence: 57 - UUAUGAGUCCUUCUAACCUCAGUUG - 81
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696