Stem-loop tca-mir-3805a

Accession

MI0016262

Description

Tribolium castaneum tca-mir-3805a precursor miRNA

Sequence

31336 reads, 191.0 reads per million, 33 experiments

uuuuguccaagcucaaguccGAUCACAUGUGGGUCGUAuauuuucaauauuaucauaaUAUAUGUCUCGCAUCUGACGGUcuugggguggguuguu
.....((((..((((((.(((.(((.(((((((.((((((((..............)))))))).))))))).)))))).)))))).)))).....

Structure

uuuug    ag      u   A   C       U        uucaau 
     ucca  cucaag ccG UCA AUGUGGG CGUAuauu      a
     ||||  |||||| ||| ||| ||||||| ||||||||       
     gggu  ggguuc GGC AGU UACGCUC GUAUAUaa      u
uuguu    -g      U   -   C       U        uacuau 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6598718-6598813 [+]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3805a

Mature tca-miR-3805a-5p

• Accession: MIMAT0018632
• Description: Tribolium castaneum tca-miR-3805a-5p mature miRNA
• Sequence: 21 - GAUCACAUGUGGGUCGUA - 38
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3805a-3p

• Accession: MIMAT0018633
• Description: Tribolium castaneum tca-miR-3805a-3p mature miRNA
• Sequence: 59 - UAUAUGUCUCGCAUCUGACGGU - 80
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696