Stem-loop tca-mir-3804a

Accession

MI0016258

Description

Tribolium castaneum tca-mir-3804a precursor miRNA

Sequence

780 reads, 41.0 reads per million, 25 experiments

auauuuuuUGGCACACAUCAAUGUCCacguuuuugugacuugauucgcugaAAUGUUCCAUAAGUGUGCuagaacaacc
.....(((((((((((....(((...(((((((.((((......)))).)))))))..)))..))))))))))).....

Structure

auauu           AUCA   UCC       u    cu 
     uuuUGGCACAC    AUG   acguuuu guga  u
     |||||||||||    |||   ||||||| ||||   
     aagauCGUGUG    UAC   UGUAAag cgcu  g
ccaac           --AA   -CU       u    ua 

Annotation confidence Medium

Genome context

ref|NW_015450233.1|: 816566-816644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3804a

Mature tca-miR-3804a-5p

• Accession: MIMAT0018624
• Description: Tribolium castaneum tca-miR-3804a-5p mature miRNA
• Sequence: 9 - UGGCACACAUCAAUGUCC - 26
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3804a-3p

• Accession: MIMAT0018625
• Description: Tribolium castaneum tca-miR-3804a-3p mature miRNA
• Sequence: 52 - AAUGUUCCAUAAGUGUGC - 69
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696