Stem-loop pab-MIR947

Accession

MI0016130

Description

Picea abies pab-MIR947 precursor miRNA

Literature search

1 open access papers mention pab-MIR947
(1 sentences)

Sequence

202736 reads, 14231.0 reads per million, 102 experiments

uguuuugUAUCGGAAUCUGUUACUGUUUCuuaggccucaagcaacuauggaaaucccuggaagcugcugcaucauacgccucagaCGCAGCAGCAGAUUCUGAUAGAagacucaggcaacgcauuuguuguug
.(((((.((((((((((((((.((((.(((.((((....(((..(((.((....)).)))..)))............)))).))).)))).)))))))))))))).)))))...((((((......)))))).

Structure

---------------------u     g              A    U   u    --------cuca   aa   u  a 
                      guuuu UAUCGGAAUCUGUU CUGU UCu aggc            agc  cua gg a
                      ||||| |||||||||||||| |||| ||| ||||            |||  ||| ||  
                      cagaA AUAGUCUUAGACGA GACG aga uccg            ucg  ggu cc a
guuguuguuuacgcaacggacu     G              C    C   c    cauacuacgucg   aa   c  u 

Annotation confidence High

Genome context

MA_412967: 2979-3111 [+]

Mature pab-miR947-5p

• Accession: MIMAT0018160
• Description: Picea abies pab-miR947-5p mature miRNA
• Sequence: 8 - UAUCGGAAUCUGUUACUGUUUC - 29
• Evidence: experimental ; cloned [1]

Mature pab-miR947-3p

• Accession: MIMAT0057442
• Description: Picea abies pab-miR947-3p mature miRNA
• Sequence: 86 - CGCAGCAGCAGAUUCUGAUAGA - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169