Stem-loop pab-MIR396b

Accession

MI0016123

Description

Picea abies pab-MIR396b precursor miRNA

Literature search

1 open access papers mention pab-MIR396b
(5 sentences)

Sequence

ucauaguuUUCCACGGCUUUCUUGAACUUacuucacgauccgguguguuggcugccgaucgcaucgauaacagauccgggugacaagaucaagaaagccgugggaaauuauagagg
(((((((((((((((((((((((((.(((...(((((((((((((((((((...)))).)))))))......))))...)))).))).))))))))))))))))))))))).))..

Structure

--  -                       A   acu    ---    ------       -    c 
  uc auaguuUUCCACGGCUUUCUUGA CUU   ucac   gauc      cggugug uugg  
  || ||||||||||||||||||||||| |||   ||||   ||||      ||||||| |||| u
  ag uauuaaagggugccgaaagaacu gaa   agug   cuag      gcuacgc agcc  
gg  a                       a   --c    ggc    acaaua       u    g 

Annotation confidence Not enough data

Genome context

MA_536062: 4037-4152 [+]

Mature pab-miR396b

• Accession: MIMAT0018153
• Description: Picea abies pab-miR396b mature miRNA
• Sequence: 9 - UUCCACGGCUUUCUUGAACUU - 29
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169