miRBase entry: pab-MIR950a

Stem-loop pab-MIR950a

Accession

MI0016094

Description

Picea abies pab-MIR950a precursor miRNA

Gene family

MIPF0000407; MIR950

Literature search

1 open access papers mention pab-MIR950a
(5 sentences)

Sequence

gaggaggaggaggaagggacgguguucuucaaguggagggagaaagagguuuuggaggugaucuUCACAUCUGGGCCACGAUGGUUuaucuuucuucguuuauuuaucauaaaccauggugccccagaugagaagagcaccuucgccuucguuuauuuacauggauuggacuguuucuggaggaaccggcaguccaucuccauuuggguauuuucucugccgaaaugguguagaugauuucauccucuccucuugucagacucugccaguugaucuggaguaagaagaagaauuugaagcgaaaguguuauugucgUCUGGGCCCCGGUGGUUUAUGAucgucuaggauguucagaaccaccguggccaagacgacaagaauacccucgucuuugcuuacauggaucucggcaaacuugauuccucaaauagaa
((((((...(((..((((((...))))))((((.((((((((((((((((...(((((((.(((((.((((((((.(((.(((((((((...................))))))))).))).)))))))).))))).))))))))))))...(((((((((.((((.((((((...((((.....))))))))))))))((((((.((((.......)))).))))))))))))))))))).))).)))).))))........((((....((((((..(((((..((((........((((..(((((.(((((((((.((((.(((((((((.(((.((((...)))).)))))))))))).)))).))))))))).)))))..)))))))).))))).))))))..))))..)))..))))))........

Structure

--------      gag   -----------------------------------------------------------------------------------------------------------------------------------------------gaagggacgguguucuu    u    -   -    ----------------------------------------------------------------------------------------     uuu       a     A        C   G         cuuucuuc 
        gaggag   gag                                                                                                                                                                caag ggag gga gaaa                                                                                        gaggu   ggaggug ucuUC CAUCUGGG CAC AUGGUUuau        g
        ||||||   |||                                                                                                                                                                |||| |||| ||| ||||                                                                                        |||||   ||||||| ||||| |||||||| ||| |||||||||        u
        cuccuu   uuc                                                                                                                                                                guuc ccuc ccu cuuu                                                                                        uuccg   cuuccac agaag guagaccc gug uaccaaaua        u
aagauaaa      -ag   aaacggcucuagguacauucguuucugcucccauaagaacagcagaaccggugccaccaagacuuguaggaucugcuAGUAUUUGGUGGCCCCGGGUCUgcuguuauugugaaagcgaaguuuaagaagaagaaugaggucuaguugaccgucucagacu    u    u   a    aguagaugugguaaagccgucucuuuuauggguuuaccucuaccugacggccaaggaggucuuugucagguuagguacauuuauuugc     ---       g     a        c   g         cuauuuau

Annotation confidence Not enough data

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Genome context

MA_138737: 9361-9794 [-]

Database links

Mature pab-miR950a-5p

Accession	MIMAT0018123
Description	Picea abies pab-miR950a-5p mature miRNA
Sequence	65 - UCACAUCUGGGCCACGAUGGUU - 86
Evidence	experimental cloned [1]

Mature pab-miR950a-3p

Accession	MIMAT0018124
Description	Picea abies pab-miR950a-3p mature miRNA
Sequence	317 - UCUGGGCCCCGGUGGUUUAUGA - 338
Evidence	experimental cloned [1]

References

PubMed ID: 20561211
MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
"Yakovlev IA, Fossdal CG, Johnsen O"
"New Phytol (2010) 187:1154-1169