Stem-loop vvi-MIR3640

Accession

MI0016040

Description

Vitis vinifera vvi-MIR3640 precursor miRNA

Literature search

1 open access papers mention vvi-MIR3640
(4 sentences)

Sequence

4710 reads, 316 reads per million, 2 experiments

ggguauaauggaauggcacccgaagcuguacacgugacaccACCUGAUUGGUGAUGCUUUUUUGGuacauauugaaaaggguaucuuucgauccuauaguaugaucaaacccggaguaugcuuauaucaguaucuAUCGAAAAGGCAUCAUCAAUCAGGuaaugccacgugugcaacucaggucucauuguuuuauaccc
((((((((.(.(((((.(((.((.(.((((((((((.((..((((((((((((((((((((((((((.(((((((...((((((.(((((.....................))))).))))))...))))))).))))))))))))))))))))))))))..)).)))))))))).))).))).))))).).))))))))

Structure

        u g     c   c  a c          a  cc                          c       aaa      c     auccuauag 
ggguauaa g aaugg acc ga g uguacacgug ca  ACCUGAUUGGUGAUGCUUUUUUGGua auauuga   ggguau uuucg         u
|||||||| | ||||| ||| || | |||||||||| ||  |||||||||||||||||||||||||| |||||||   |||||| |||||         a
cccauauu u uuacu ugg cu c acgugugcac gu  uGGACUAACUACUACGGAAAAGCUAu uaugacu   uucgua gaggc         u
        u g     c   a  - a          c  aa                          c       aua      u     ccaaacuag 

Annotation confidence High

Genome context

chr16: 11986826-11987025 [+]

Mature vvi-miR3640-5p

• Accession: MIMAT0018053
• Description: Vitis vinifera vvi-miR3640-5p mature miRNA
• Sequence: 42 - ACCUGAUUGGUGAUGCUUUUUUGG - 65
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3640-3p

• Accession: MIMAT0018054
• Description: Vitis vinifera vvi-miR3640-3p mature miRNA
• Sequence: 136 - AUCGAAAAGGCAUCAUCAAUCAGG - 159
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976