Stem-loop vvi-MIR3635

Accession

MI0016035

Description

Vitis vinifera vvi-MIR3635 precursor miRNA

Sequence

2066 reads, 139 reads per million, 2 experiments

aauaacaagaaGGCAUGUGUGGGGCAUAAUAGagaaugcaaagaaaggguugcuauugagugugauauugggacaaugacauaccauuuuuuugcauugucuAUUAUGUCCCACACAUGCCUCcuuguuauu
(((((((((.(((((((((((((((((((((((.((((((((((((((..((.(((((...............))))).))..)).)))))))))))).))))))))))))))))))))))).)))))))))

Structure

         a                       g            -  gu  c     agugug 
aauaacaag aGGCAUGUGUGGGGCAUAAUAGa aaugcaaagaaa gg  ug uauug      a
||||||||| ||||||||||||||||||||||| |||||||||||| ||  || |||||      u
uuauuguuc UCCGUACACACCCUGUAUUAucu uuacguuuuuuu cc  ac guaac      a
         C                       g            a  au  a     aggguu 

Annotation confidence Low

Genome context

chr18: 27357633-27357764 [+]

Mature vvi-miR3635-5p

• Accession: MIMAT0018043
• Description: Vitis vinifera vvi-miR3635-5p mature miRNA
• Sequence: 12 - GGCAUGUGUGGGGCAUAAUAG - 32
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3635-3p

• Accession: MIMAT0018044
• Description: Vitis vinifera vvi-miR3635-3p mature miRNA
• Sequence: 103 - AUUAUGUCCCACACAUGCCUC - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976