Stem-loop vvi-MIR3633b

Accession

MI0016034

Description

Vitis vinifera vvi-MIR3633b precursor miRNA

Literature search

2 open access papers mention vvi-MIR3633b
(5 sentences)

Sequence

789 reads, 53 reads per million, 2 experiments

ucccggaggcccaugGGAAUGGGUGGCUGGGAUCUAauguuucuucacaucauguagaugugucaaaaagcugaguugGUUCCCAUGCCAUCCAUUCCUAucguucccggga
((((((.(((..((((((((((((((((((((.(((((((((...((((((.....)))))).....))))...))))).))))).))))))))))))))).))).))))))

Structure

      a   cc               -     U     ---    --cuu      a 
ucccgg ggc  augGGAAUGGGUGGC UGGGA CUAau   guuu     cacauc u
|||||| |||  ||||||||||||||| ||||| |||||   ||||     |||||| g
agggcc uug  uAUCCUUACCUACCG ACCCU Gguug   cgaa     guguag u
      c   -c               U     U     agu    aaacu      a 

Annotation confidence High

Genome context

chr17: 5521567-5521678 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR3633b

Mature vvi-miR3633b-5p

• Accession: MIMAT0018041
• Description: Vitis vinifera vvi-miR3633b-5p mature miRNA
• Sequence: 16 - GGAAUGGGUGGCUGGGAUCUA - 36
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3633b-3p

• Accession: MIMAT0018042
• Description: Vitis vinifera vvi-miR3633b-3p mature miRNA
• Sequence: 79 - GUUCCCAUGCCAUCCAUUCCUA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976