Stem-loop vvi-MIR3631d

Accession

MI0016030

Description

Vitis vinifera vvi-MIR3631d precursor miRNA

Literature search

2 open access papers mention vvi-MIR3631d
(4 sentences)

Sequence

29 reads, 2 reads per million, 2 experiments

uaaaaguaaccuauuaauaucaaccaacauaauuaaaagugaacuuguuauuaucaauaaguuuaguuuaguuauauuuauugauauuaauaaguuacuuuuaacggaauaggaaaaacuaaggugauguuuguuuuuaguuuuuucuauucagauaaaaguaaCAUGUUGACAUCAUCCAAUAUAauuaaacugaacauauaacaaguucauuuuaauuauguuggauaauaucaauagauuacuuuua
(((((((((.(((((.((((...(((((((((((((((.((((((((((((.........((((((((((((((((((...((((.((((((.((((((((((.(.((((((((((((((((((..........)))))))))))))))))).).)))))))))).)))))).))))...))))))))))))))))))..)))))))))))))))))))))))))))...)))).))))).)))))))))

Structure

         c     a    caa               g            uaucaauaa                  uau    a      a          a g                  ugau 
uaaaaguaa cuauu auau   ccaacauaauuaaaa ugaacuuguuau         guuuaguuuaguuauauu   ugau uuaaua guuacuuuua c gaauaggaaaaacuaagg    g
||||||||| ||||| ||||   ||||||||||||||| ||||||||||||         ||||||||||||||||||   |||| |||||| |||||||||| | ||||||||||||||||||     
auuuucauu gauaa uaua   gguuguauuaauuuu acuugaacaaua         caagucaaauuaAUAUAA   ACUA AGUUGU Caaugaaaau g cuuaucuuuuuugauuuu    u
         a     c    aua               -            -------ua                  CCU    C      A          a a                  uguu 

Annotation confidence Not enough data

Genome context

Unknown

Mature vvi-miR3631d

• Accession: MIMAT0018034
• Description: Vitis vinifera vvi-miR3631d mature miRNA
• Sequence: 165 - CAUGUUGACAUCAUCCAAUAUA - 186
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976