Stem-loop vvi-MIR3631b

Accession

MI0016028

Description

Vitis vinifera vvi-MIR3631b precursor miRNA

Literature search

2 open access papers mention vvi-MIR3631b
(4 sentences)

Sequence

238 reads, 16 reads per million, 2 experiments

gugguguuuguuuuuuauuuuuucuauucagcuaaaaguaaCAUGUUGACAUCAUCCAAUAUAacuaaacugaaccuauugauaacaaguucauuuuagcuaUGUUGGAUGAUGUCAAUAAGUuacuuuuaacuaaauaaaaaaagccaaaaaacaaacaccac
((((((((((((((((.((((((.((((.((.((((((((((.((((((((((((((((((((.(((((.(((((...(((....)))))))).))))).)))))))))))))))))))).)))))))))).)).)))).))))))..))))))))))))))))

Structure

                -a      c    c  c          A                    a     c     cua   a 
gugguguuuguuuuuu  uuuuuu uauu ag uaaaaguaaC UGUUGACAUCAUCCAAUAUA cuaaa ugaac   uug u
||||||||||||||||  |||||| |||| || |||||||||| |||||||||||||||||||| ||||| |||||   |||  
caccacaaacaaaaaa  gaaaaa auaa uc auuuucauUG AUAACUGUAGUAGGUUGUau gauuu acuug   aac a
                cc      a    a  a          A                    c     u     ---   a 

Annotation confidence Low

Genome context

chr5: 6430141-6430304 [+]

Mature vvi-miR3631b-5p

• Accession: MIMAT0018031
• Description: Vitis vinifera vvi-miR3631b-5p mature miRNA
• Sequence: 42 - CAUGUUGACAUCAUCCAAUAUA - 63
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3631b-3p

• Accession: MIMAT0018032
• Description: Vitis vinifera vvi-miR3631b-3p mature miRNA
• Sequence: 103 - UGUUGGAUGAUGUCAAUAAGU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976