Stem-loop vvi-MIR3629b

Accession

MI0016023

Description

Vitis vinifera vvi-MIR3629b precursor miRNA

Literature search

2 open access papers mention vvi-MIR3629b
(2 sentences)

Sequence

167 reads, 11 reads per million, 2 experiments

uuuguuuucguccgguuucucagcaaccaaacaggguucauucgauuuugaaauuccuacaucggaugcuggguguuGGCUGCUGAGAAAAUGUAGGAagaggga
(((.(((((.(.((.((((((((((.((((.((.....((((((((...(......)...)))))))).....)))))).)))))))))).)).).))))).)))

Structure

   g     g c  g          a    a  ggguu        uuu aa 
uuu uuuuc u cg uuucucagca ccaa ca     cauucgau   g  a
||| ||||| | || |||||||||| |||| ||     ||||||||   |   
agg agaAG A GU AAAGAGUCGU GGuu gu     guaggcua   c  u
   g     G U  A          C    -  ggguc        cau cu 

Annotation confidence Not enough data

Genome context

chr14: 3031525-3031629 [+]

Mature vvi-miR3629b

• Accession: MIMAT0018023
• Description: Vitis vinifera vvi-miR3629b mature miRNA
• Sequence: 78 - GGCUGCUGAGAAAAUGUAGGA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976