Stem-loop vvi-MIR3629a

Accession

MI0016022

Description

Vitis vinifera vvi-MIR3629a precursor miRNA

Literature search

2 open access papers mention vvi-MIR3629a
(2 sentences)

Sequence

184 reads, 12 reads per million, 2 experiments

uuuuuuuuuccCGCAUUUUCUCAGCAGCCAAGcagagugugggguuuaagagauuaucgacuuggauugugcugcuaguugcugcacauuuucuggguuucaagugguuccaacuggguuuggauuuguaucucuccguuuaucacuuaguuuGGCUGCUGAGAAAAUGUAGGAaaaagaaa
.((((((((((.(((((((((((((((((((((.(((((...((....((((((....((((((((.(((((.((.....)).)))))...)))))))).........(((((......))))).....))))))))......))))).))))))))))))))))))))).)))))))))).

Structure

u          C                     a     ---ugg  uuua      --------------------------uauc        --u     u  u 
 uuuuuuuucc GCAUUUUCUCAGCAGCCAAGc gagug      gg    agagau                              gacuugga   ugugc gc a
 |||||||||| ||||||||||||||||||||| |||||      ||    ||||||                              ||||||||   ||||| || g
 aagaaaaAGG UGUAAAAGAGUCGUCGGuuug uucac      cc    ucucua                              uugggucu   acacg cg u
a          A                     a     uauuug  ----      uguuuagguuugggucaaccuuggugaacu        uuu     u  u 

Annotation confidence Not enough data

Genome context

chr13: 18253988-18254169 [+]

Mature vvi-miR3629a-5p

• Accession: MIMAT0018021
• Description: Vitis vinifera vvi-miR3629a-5p mature miRNA
• Sequence: 12 - CGCAUUUUCUCAGCAGCCAAG - 32
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3629a-3p

• Accession: MIMAT0018022
• Description: Vitis vinifera vvi-miR3629a-3p mature miRNA
• Sequence: 154 - GGCUGCUGAGAAAAUGUAGGA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976