Stem-loop vvi-MIR3626

Accession

MI0016019

Description

Vitis vinifera vvi-MIR3626 precursor miRNA

Literature search

1 open access papers mention vvi-MIR3626
(2 sentences)

Sequence

83564 reads, 614.0 reads per million, 221 experiments

gccuucaCCGGUAGUCGCUGUGAAAUUGaaguauaguuugcgcuauuccaauggacagugcaaacuauacuuCAAUUUCACAGCGACCACUGGugaaggc
((((((((((((.(((((((((((((((((((((((((((((((..(((...))).))))))))))))))))))))))))))))))).))))))))))))

Structure

            A                               au   a 
gccuucaCCGGU GUCGCUGUGAAAUUGaaguauaguuugcgcu  ucc  
|||||||||||| |||||||||||||||||||||||||||||||  ||| a
cggaaguGGUCA CAGCGACACUUUAACuucauaucaaacguga  agg  
            C                               -c   u 

Annotation confidence Medium

Genome context

gb|CP126655.1|: 19559721-19559820 [+]

Mature vvi-miR3626-5p

• Accession: MIMAT0018015
• Description: Vitis vinifera vvi-miR3626-5p mature miRNA
• Sequence: 8 - CCGGUAGUCGCUGUGAAAUUG - 28
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3626-3p

• Accession: MIMAT0018016
• Description: Vitis vinifera vvi-miR3626-3p mature miRNA
• Sequence: 73 - CAAUUUCACAGCGACCACUGG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976