Stem-loop vvi-MIR3623

Accession

MI0016015

Description

Vitis vinifera vvi-MIR3623 precursor miRNA

Literature search

1 open access papers mention vvi-MIR3623
(3 sentences)

Sequence

31245 reads, 2095 reads per million, 2 experiments

aagaauuuugaugaucuUCACAAGUUCAUCCAAGCACCAucuaaagcucaaacaggccuacgguuuucuucaaaacuaggcuuauucaugaUGGUGCUUGGACGAAUUUGCUAagaacauuaaguucuu
((((((((.((((.((((..(((((((.(((((((((((((............((((((..((((((....))))))))))))......))))))))))))).)))))))..)))).))))))))))))

Structure

        u    a    CA       A             uaaagcucaaac      ac      c 
aagaauuu gaug ucuU  CAAGUUC UCCAAGCACCAuc            aggccu  gguuuu u
|||||||| |||| ||||  ||||||| |||||||||||||            ||||||  ||||||  
uucuugaa uuac agaA  GUUUAAG AGGUUCGUGGUag            uucgga  ucaaaa u
        -    a    UC       C             ------uacuua      --      c 

Annotation confidence High

Genome context

chr18: 24650012-24650140 [+]

Mature vvi-miR3623-5p

• Accession: MIMAT0018007
• Description: Vitis vinifera vvi-miR3623-5p mature miRNA
• Sequence: 18 - UCACAAGUUCAUCCAAGCACCA - 39
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3623-3p

• Accession: MIMAT0018008
• Description: Vitis vinifera vvi-miR3623-3p mature miRNA
• Sequence: 92 - UGGUGCUUGGACGAAUUUGCUA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976