Stem-loop bta-mir-3596

Accession

MI0015952

Description

Bos taurus bta-mir-3596 precursor miRNA

Literature search

6 open access papers mention bta-mir-3596
(13 sentences)

Sequence

3142949 reads, 1526.0 reads per million, 219 experiments

cucgaGGAAGGCAGUAGGUUGUAUAGuuaucuuccgagggggcaacaucacuacccugaAACCACACAACCUACUACCUCAcc
.....(..(((.((((((((((...(((.((.....((((.............)))))))))...)))))))))).)))..).

Structure

cucga GA   C          AUA   a  uuccg    ggcaa 
     G  AGG AGUAGGUUGU   Guu uc     aggg     c
     |  ||| ||||||||||   ||| ||     ||||     a
     c  UCC UCAUCCAACA   CAA ag     uccc     u
----c AC   A          CAC   -  -----    aucac 

Annotation confidence Medium

Genome context

5: 116409213-116409295 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bta-mir-3596

Mature bta-miR-3596-5p

• Accession: MIMAT0050971
• Description: Bos taurus bta-miR-3596-5p mature miRNA
• Sequence: 6 - GGAAGGCAGUAGGUUGUAUAG - 26
• Evidence: experimental ; cloned [1]

Mature bta-miR-3596-3p

• Accession: MIMAT0016940
• Description: Bos taurus bta-miR-3596-3p mature miRNA
• Sequence: 60 - AACCACACAACCUACUACCUCA - 81
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443