Stem-loop ssc-mir-1271

Accession

MI0015922

Description

Sus scrofa ssc-mir-1271 precursor miRNA

Literature search

2 open access papers mention ssc-mir-1271
(2 sentences)

Sequence

986434 reads, 804.0 reads per million, 211 experiments

uagaucagugCUUGGCACCUAGUAAGCACUCAguauauacuuguugAGUGCCUGCUAUGUGCCAGGCAuugugcugag
(((..(((((((((((((.(((((.((((((((((......)))))))))).))))).)))))))))))))..)))..

Structure

--   au             C     A          ua 
  uag  cagugCUUGGCAC UAGUA GCACUCAgua  u
  |||  ||||||||||||| ||||| ||||||||||   
  guc  guuACGGACCGUG AUCGU CGUGAguugu  a
ga   gu             U     C          uc 

Annotation confidence High

Genome context

chr2: 83154226-83154303 [-]

Mature ssc-miR-1271-5p

• Accession: MIMAT0037381
• Description: Sus scrofa ssc-miR-1271-5p mature miRNA
• Sequence: 11 - CUUGGCACCUAGUAAGCACUCA - 32
• Evidence: experimental ; Illumina [3]

Mature ssc-miR-1271-3p

• Accession: MIMAT0017967
• Description: Sus scrofa ssc-miR-1271-3p mature miRNA
• Sequence: 47 - AGUGCCUGCUAUGUGCCAGGCA - 68
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


3. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252