Stem-loop ssc-mir-652

Accession

MI0015919

Description

Sus scrofa ssc-mir-652 precursor miRNA

Literature search

2 open access papers mention ssc-mir-652
(8 sentences)

Sequence

13 reads, 7 reads per million, 8 experiments

uaugcacugcACAACCCUAGGAGAGGGUGCCAUUCAcauagacuauaauugaauggcgccacuaggguugugcagugcacaac
..((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))....

Structure

--ua                  GAGAG           ca  g 
    ugcacugcACAACCCUAG     GGUGCCAUUCA  ua a
    ||||||||||||||||||     |||||||||||  || c
    acgugacguguugggauc     ccgcgguaagu  au u
caac                  ----a           ua  a 

Annotation confidence Low

Genome context

chrUScaf2837: 52753-52835 [-]

Mature ssc-miR-652

• Accession: MIMAT0017964
• Description: Sus scrofa ssc-miR-652 mature miRNA
• Sequence: 11 - ACAACCCUAGGAGAGGGUGCCAUUCA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275