miRBase entry: ssc-mir-376c

Stem-loop ssc-mir-376c


Accession
MI0015915
Description
Sus scrofa ssc-mir-376c precursor miRNA

Literature search
3 open access papers mention ssc-mir-376c
(4 sentences)

Sequence

uauuuaaaagGUGGAUAUUCCUUCUAUGUUUAuguuauuugugguuaaacauagaggaaauuccacguuuucaguauc
((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).))))..

Structure
--    u    g     UA     U         uguua 
  uauu aaaa GUGGA  UUCCU CUAUGUUUA     u
  |||| |||| |||||  ||||| |||||||||     u
  auga uuuu caccu  aagga gauacaaau     u
cu    c    g     ua     -         uggug 


Annotation confidence Not enough data
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Genome context
chrUScaf2115: 32036-32113 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-376c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-376c

Accession MIMAT0017960
Description Sus scrofa ssc-miR-376c mature miRNA
Sequence 11 - GUGGAUAUUCCUUCUAUGUUUA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275