Stem-loop ssc-mir-4331-1

Accession

MI0015910

Description

Sus scrofa ssc-mir-4331-1 precursor miRNA

Literature search

2 open access papers mention ssc-mir-4331-1
(46 sentences)

Sequence

59296 reads, 85.0 reads per million, 209 experiments

ccaugagcuaUGGCGUAGAUCACAGACACAGCucagaucuggcauuGCUGUGGCUGUGGUGUAGGCcagcagcuuugcuc
....(((((.((((.((.(((((((.((((((..............)))))).))))))).)).))))..))))).....

Structure

-ccau     -a    G  G       A      ucagau 
     gagcu  UGGC UA AUCACAG CACAGC      c
     |||||  |||| || ||||||| ||||||       
     uucga  acCG AU UGGUGUC GUGUCG      u
cucgu     cg    G  G       G      uuacgg 

Annotation confidence Medium

Genome context

chr6: 60130099-60130178 [-]

Mature ssc-miR-4331-5p

• Accession: MIMAT0037379
• Description: Sus scrofa ssc-miR-4331-5p mature miRNA
• Sequence: 11 - UGGCGUAGAUCACAGACACAGC - 32
• Evidence: experimental ; Illumina [3]

Mature ssc-miR-4331-3p

• Accession: MIMAT0017955
• Description: Sus scrofa ssc-miR-4331-3p mature miRNA
• Sequence: 47 - GCUGUGGCUGUGGUGUAGGC - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


3. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252