Stem-loop ssc-mir-194b

Accession

MI0015905

Description

Sus scrofa ssc-mir-194b precursor miRNA

Literature search

12 open access papers mention ssc-mir-194b
(34 sentences)

Sequence

cgccaucagcUGUAACAGCGACUCCAUGUGGAcugugccccaauuuCCAGUGGAGAUGCUGUUACCUUugacggcgac
((((.((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))).))))..

Structure

--    a    cU         A      G    cu  gc 
  cgcc ucag  GUAACAGCG CUCCAU UGGA  gu  c
  |||| ||||  ||||||||| |||||| ||||  ||   
  gcgg aguU  CAUUGUCGU GAGGUG ACCu  ua  c
ca    c    UC         A      -    -u  ac 

Annotation confidence Not enough data

Genome context

chr10: 11786871-11786948 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-194b

Mature ssc-miR-194b-3p

• Accession: MIMAT0017951
• Description: Sus scrofa ssc-miR-194b-3p mature miRNA
• Sequence: 47 - CCAGUGGAGAUGCUGUUACCUU - 68
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-194b-5p

• Accession: MIMAT0020365
• Description: Sus scrofa ssc-miR-194b-5p mature miRNA
• Sequence: 11 - UGUAACAGCGACUCCAUGUGGA - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328