Stem-loop cin-mir-4190

Accession

MI0015747

Description

Ciona intestinalis cin-mir-4190 precursor miRNA

Sequence

17 reads, 62.0 reads per million, 4 experiments

AUAUGAGUUUAUAUUUACAuauacauguauauguguguguaugggaaaggauuuuauau
(((((((.((.....(((((((((((....)))))))))))........)).)))))))

Structure

       U  ---AUAUU           g 
AUAUGAG UU        UACAuauacau u
||||||| ||        |||||||||||  
uauauuu ag        augugugugua a
       u  gaaagggu           u 

Annotation confidence Not enough data

Genome context

ref|NC_020177.1|: 3525688-3525746 [-]

Mature cin-miR-4190-5p

• Accession: MIMAT0016808
• Description: Ciona intestinalis cin-miR-4190-5p mature miRNA
• Sequence: 1 - AUAUGAGUUUAUAUUUACA - 19
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39