Stem-loop cin-mir-4185

Accession

MI0015742

Description

Ciona intestinalis cin-mir-4185 precursor miRNA

Sequence

332 reads, 454.0 reads per million, 9 experiments

CAGCGGUGAUGAUAAUACCuggacgugauuuauaaugaugcaugUUGUAUUCAUACUGUCUGAGCUG
((((((((.(((..((((...((((((..(((...)))..)))))))))))))))))).))).....

Structure

-----   -     A   UA    Cug      au   u 
     CAG CGGUG UGA  AUAC   gacgug  uua  
     ||| ||||| |||  ||||   ||||||  ||| a
     GUC GUCAU ACU  UAUG   UUguac  agu  
GUCGA   U     -   --    ---      gu   a 

Annotation confidence Medium

Genome context

ref|NC_020174.1|: 5591662-5591728 [+]

Mature cin-miR-4185-5p

• Accession: MIMAT0016802
• Description: Ciona intestinalis cin-miR-4185-5p mature miRNA
• Sequence: 1 - CAGCGGUGAUGAUAAUACC - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4185-3p

• Accession: MIMAT0016803
• Description: Ciona intestinalis cin-miR-4185-3p mature miRNA
• Sequence: 45 - UUGUAUUCAUACUGUCUGAGCUG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39