Stem-loop cin-mir-4183

Accession

MI0015739

Description

Ciona intestinalis cin-mir-4183 precursor miRNA

Sequence

4 reads, 4 reads per million, 1 experiments

AGCGGGAAGGAGUGGCCGGUgauauaacagagauaauacagguacuuuguuauucuuAUCCGUGAUCGCUUUGCCCGGC
..((((..((((((((((((((.(((((((((((.......)).)))))))))..))).))).).))))))).))))..

Structure

AG    AA       - -   -   -u         -  aa 
  CGGG  GGAGUGG C CGG Uga  auaacagag au  u
  ||||  ||||||| | ||| |||  ||||||||| ||  a
  GCCC  UUUCGCU G GCC Auu  uauuguuuc ug  c
CG    -G       A U   U   cu         a  ga 

Annotation confidence Not enough data

Genome context

8q: 1437629-1437707 [-]

Mature cin-miR-4183-5p

• Accession: MIMAT0016798
• Description: Ciona intestinalis cin-miR-4183-5p mature miRNA
• Sequence: 1 - AGCGGGAAGGAGUGGCCGGU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4183-3p

• Accession: MIMAT0016799
• Description: Ciona intestinalis cin-miR-4183-3p mature miRNA
• Sequence: 58 - AUCCGUGAUCGCUUUGCCCGGC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39