Stem-loop cin-mir-4182

Accession

MI0015738

Description

Ciona intestinalis cin-mir-4182 precursor miRNA

Sequence

4 reads, 2 reads per million, 1 experiments

CAUAAUGGAGGUUUUUUACUagugccaaaaauacuggUCAAAAAAUCUGCAGAAUG
(((..((.((((((((((((((((.......))))))).))))))))).))..)))

Structure

   AA  G         -       cc 
CAU  UG AGGUUUUUU ACUagug  a
|||  || ||||||||| |||||||  a
GUA  AC UCUAAAAAA Uggucau  a
   AG  G         C       aa 

Annotation confidence Not enough data

Genome context

10p: 898374-898429 [+]

Mature cin-miR-4182-5p

• Accession: MIMAT0016796
• Description: Ciona intestinalis cin-miR-4182-5p mature miRNA
• Sequence: 1 - CAUAAUGGAGGUUUUUUACU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4182-3p

• Accession: MIMAT0016797
• Description: Ciona intestinalis cin-miR-4182-3p mature miRNA
• Sequence: 38 - UCAAAAAAUCUGCAGAAUG - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39