Stem-loop cin-mir-4158

Accession

MI0015713

Description

Ciona intestinalis cin-mir-4158 precursor miRNA

Sequence

6 reads, 2 reads per million, 2 experiments

UGCCCGAUGAUGUUAUUGUUUUgcauguauuaacuuaacgcagauauguggaguucauuucacacugagggcauuaacuguuuuaaauguuguugcuuuugcaaacauauaacacacuagcc
.((..(.((.(((((((((((.(((...............(((...((((((......)))))))))((((((.((((..........)))).)))))))))))))).)))))))))..)).

Structure

U  CC A  A      -     U   uguauuaacuuaacgcagauauguggaguucauuucacacug      u    uguu 
 GC  G UG UGUUAU UGUUU gca                                          agggca uaac    u
 ||  | || |||||| ||||| |||                                          |||||| ||||     
 cg  c ac acaaua acaaa cgu                                          uuucgu guug    u
c  au -  -      u     -   ------------------------------------------      u    uaaa 

Annotation confidence Not enough data

Genome context

12q: 435082-435203 [+]

Mature cin-miR-4158-5p

• Accession: MIMAT0016764
• Description: Ciona intestinalis cin-miR-4158-5p mature miRNA
• Sequence: 1 - UGCCCGAUGAUGUUAUUGUUUU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39