Stem-loop cin-mir-4156

Accession

MI0015711

Description

Ciona intestinalis cin-mir-4156 precursor miRNA

Sequence

8 reads, 3 reads per million, 2 experiments

AGGUAAGGUCCUACAGCGUgguacaccacggucacaaauuucgaccucccauuaUCAUGCUGUAGGACUUUACC
.((((((((((((((((((((((......((((.........))))......))))))))))))))))))))))

Structure

A                      caccac    aca 
 GGUAAGGUCCUACAGCGUggua      gguc   a
 ||||||||||||||||||||||      ||||   a
 CCAUUUCAGGAUGUCGUACUau      ccag   u
-                      uacccu    cuu 

Annotation confidence Not enough data

Genome context

9q: 2300328-2300401 [+]

Mature cin-miR-4156-5p

• Accession: MIMAT0016761
• Description: Ciona intestinalis cin-miR-4156-5p mature miRNA
• Sequence: 1 - AGGUAAGGUCCUACAGCGU - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4156-3p

• Accession: MIMAT0016762
• Description: Ciona intestinalis cin-miR-4156-3p mature miRNA
• Sequence: 55 - UCAUGCUGUAGGACUUUACC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39