Stem-loop cin-mir-4154

Accession

MI0015709

Description

Ciona intestinalis cin-mir-4154 precursor miRNA

Sequence

4 reads, 4 reads per million, 1 experiments

gacugacgaugccauuuaagcgaaauauauaucuuuaauacaacuauugguuggacuuuauuuuagUUUGUUGGUUUUCGUAGC
..(((.(((.((((..(((((((((((....(((((((((....))))))..)))...)))))).))))).))))..)))))).

Structure

ga   a   -u    uu     -      uaua   --      c 
  cug cga  gcca  uaagc gaaaua    ucu  uuaaua a
  ||| |||  ||||  ||||| ||||||    |||  ||||||  
  GAU GCU  UGGU  GUUUg uuuuau    agg  gguuau a
-C   -   UU    -U     a      -uuc   uu      c 

Annotation confidence Not enough data

Genome context

14p: 2319664-2319747 [-]

Mature cin-miR-4154-3p

• Accession: MIMAT0016758
• Description: Ciona intestinalis cin-miR-4154-3p mature miRNA
• Sequence: 67 - UUUGUUGGUUUUCGUAGC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39