miRBase entry: cin-mir-4145

Stem-loop cin-mir-4145


Accession
MI0015700
Description
Ciona intestinalis cin-mir-4145 precursor miRNA


Sequence

16 reads, 5.0 reads per million, 5 experiments
ugacguagugguuaguugaaugugaaugaguuauucugagugauggcggguugAAUGGAAUUGUUGAUGUGG
.(((...((.((((.(((((((.........))))).)).)))).))..)))....................

Structure
-------------------u   gua  g    g  -     uga 
                    gac   gu guua uu gaaug   a
                    |||   || |||| || |||||   u
                    uug   cg uagu ag cuuau   g
GGUGUAGUUGUUAAGGUAAg   -gg  g    g  u     uga 


Annotation confidence Not enough data
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Genome context
ref|NW_004191428.1|: 13904-13975 [+]

Database links

Mature cin-miR-4145-3p

Accession MIMAT0016748
Description Ciona intestinalis cin-miR-4145-3p mature miRNA
Sequence 54 - AAUGGAAUUGUUGAUGUGG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39