Stem-loop cin-mir-4144

Accession

MI0015699

Description

Ciona intestinalis cin-mir-4144 precursor miRNA

Sequence

8 reads, 3 reads per million, 2 experiments

UUCGUCUGACAUUCGGCAAGacuucaccaggguguaccagguuuaaccuguaaugAAGUCUUGCAUCGUGGCAGA
....((((.(((...(((((((((((.((((...............))))...)))))))))))...))).))))

Structure

UUCG    A   UCG           --c    guguac 
    UCUG CAU   GCAAGacuuca   cagg      c
    |||| |||   |||||||||||   ||||      a
    AGAC GUG   CGUUCUGAAgu   gucc      g
----    G   CUA           aau    aauuug 

Annotation confidence Not enough data

Genome context

10p: 1531589-1531663 [+]

Mature cin-miR-4144-5p

• Accession: MIMAT0016746
• Description: Ciona intestinalis cin-miR-4144-5p mature miRNA
• Sequence: 1 - UUCGUCUGACAUUCGGCAAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4144-3p

• Accession: MIMAT0016747
• Description: Ciona intestinalis cin-miR-4144-3p mature miRNA
• Sequence: 56 - AAGUCUUGCAUCGUGGCAGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39