Stem-loop cin-mir-4135

Accession

MI0015690

Description

Ciona intestinalis cin-mir-4135 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

cuaccuauuuaacugauacaucaauaagucaugauGCCAUGUUGAUUUGGUGGCU
(((((...(((((((...(((((........))))).)).)))))...)))))..

Structure

--     uau     -  aua     aua 
  cuacc   uuaac ug   cauca   a
  |||||   ||||| ||   |||||    
  GGUGG   AGUUG AC   Guagu   g
UC     UUU     U  --C     acu 

Annotation confidence Not enough data

Genome context

2q: 3205448-3205502 [+]

Mature cin-miR-4135-3p

• Accession: MIMAT0016732
• Description: Ciona intestinalis cin-miR-4135-3p mature miRNA
• Sequence: 36 - GCCAUGUUGAUUUGGUGGCU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39