Stem-loop cin-mir-4110

Accession

MI0015664

Description

Ciona intestinalis cin-mir-4110 precursor miRNA

Sequence

27 reads, 6.0 reads per million, 3 experiments

AACCAUGUUAAUAGCAGUUGuacacauguauggauguaccuaCACAUGUUGUUAACAUGG
..((((((((((((((..((((.((((......))))...))))..))))))))))))))

Structure

AA              GU    --c    gu 
  CCAUGUUAAUAGCA  UGua   acau  a
  ||||||||||||||  ||||   ||||   
  GGUACAAUUGUUGU  ACau   ugua  u
--              AC    cca    gg 

Annotation confidence Not enough data

Genome context

ref|NC_020177.1|: 568401-568460 [+]

Mature cin-miR-4110-5p

• Accession: MIMAT0016698
• Description: Ciona intestinalis cin-miR-4110-5p mature miRNA
• Sequence: 1 - AACCAUGUUAAUAGCAGUUG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4110-3p

• Accession: MIMAT0016699
• Description: Ciona intestinalis cin-miR-4110-3p mature miRNA
• Sequence: 43 - CACAUGUUGUUAACAUGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39