miRBase entry: cin-mir-4092

Stem-loop cin-mir-4092


Accession
MI0015645
Description
Ciona intestinalis cin-mir-4092 precursor miRNA


Sequence

420 reads, 51.0 reads per million, 4 experiments
CGUGUUGUGGAGAACGACAAUAGCgcaacuugcUAGGUCUGUCUACACAGCAA
..(((((((.(((..(((..(((((.....))))).)))..))).))))))).

Structure
CG       G   AC   AA     c 
  UGUUGUG AGA  GAC  UAGCg a
  ||||||| |||  |||  ||||| a
  ACGACAC UCU  CUG  AUcgu c
-A       A   GU   -G     u 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
ref|NC_020169.1|: 339205-339257 [-]

Database links

Mature cin-miR-4092-5p

Accession MIMAT0016670
Description Ciona intestinalis cin-miR-4092-5p mature miRNA
Sequence 1 - CGUGUUGUGGAGAACGACAAUAGC - 24
Evidence experimental
Illumina [1]

Mature cin-miR-4092-3p

Accession MIMAT0016671
Description Ciona intestinalis cin-miR-4092-3p mature miRNA
Sequence 34 - UAGGUCUGUCUACACAGCAA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39