Stem-loop cin-mir-4091

Accession

MI0015644

Description

Ciona intestinalis cin-mir-4091 precursor miRNA

Sequence

2726 reads, 514.0 reads per million, 8 experiments

UGGCAGUGAGCUAUCGUAGCAGGCuguugcaguggcuacacaucaugugacgucaugaaaucaaaCAGCUGUUACCUCACUACCU
.((.((((((.....(((((((.(((((...(((((..((((...))))..))))).......)))))))))))))))))).)).

Structure

U  C      CUAUC       G     ----gca     ua    u 
 GG AGUGAG     GUAGCAG Cuguu       guggc  caca  
 || ||||||     ||||||| |||||       |||||  |||| c
 CC UCACUC     CAUUGUC GACaa       uacug  gugu  
U  A      -----       -     acuaaag     ca    a 

Annotation confidence High

Genome context

ref|NC_020175.1|: 3228800-3228884 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cin-mir-4091

Mature cin-miR-4091-5p

• Accession: MIMAT0016668
• Description: Ciona intestinalis cin-miR-4091-5p mature miRNA
• Sequence: 1 - UGGCAGUGAGCUAUCGUAGCAGGC - 24
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4091-3p

• Accession: MIMAT0016669
• Description: Ciona intestinalis cin-miR-4091-3p mature miRNA
• Sequence: 66 - CAGCUGUUACCUCACUACCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39