Stem-loop cin-mir-4054

Accession

MI0015605

Description

Ciona intestinalis cin-mir-4054 precursor miRNA

Sequence

44546 reads, 2753.0 reads per million, 8 experiments

UAUGAUUGAUGUUUAAUGGCUCUuaacaaaaacguagAGCUUUUGACCAUCUUUCUG
...((..((((.((((.((((((..((......)))))))).)))).))))..))..

Structure

UAU  UU    U    U      ua  aa 
   GA  GAUG UUAA GGCUCU  ac  a
   ||  |||| |||| ||||||  ||   
   CU  CUAC AGUU UCGAga  ug  a
-GU  UU    C    U      --  ca 

Annotation confidence Medium

Genome context

ref|NC_020175.1|: 3226200-3226256 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cin-mir-4054

Mature cin-miR-4054-5p

• Accession: MIMAT0016597
• Description: Ciona intestinalis cin-miR-4054-5p mature miRNA
• Sequence: 1 - UAUGAUUGAUGUUUAAUGGCUCU - 23
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4054-3p

• Accession: MIMAT0016598
• Description: Ciona intestinalis cin-miR-4054-3p mature miRNA
• Sequence: 38 - AGCUUUUGACCAUCUUUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39