Stem-loop cin-mir-4048

Accession

MI0015599

Description

Ciona intestinalis cin-mir-4048 precursor miRNA

Sequence

9785 reads, 593.0 reads per million, 9 experiments

GCACCUUGGUCACCAUUAUUUGCUCcuuuuauauugaGCAGUACUGGAGACAGGUGG
.(((((..(((.(((.((((.((((..........)))))))).))).)))))))).

Structure

G     UG   A   U    U    cuuu 
 CACCU  GUC CCA UAUU GCUC    u
 |||||  ||| ||| |||| ||||     
 GUGGA  CAG GGU AUGA CGag    a
G     --   A   C    -    uuau 

Annotation confidence High

Genome context

ref|NC_020178.1|: 1257514-1257570 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4048

Mature cin-miR-4048-5p

• Accession: MIMAT0016585
• Description: Ciona intestinalis cin-miR-4048-5p mature miRNA
• Sequence: 1 - GCACCUUGGUCACCAUUAUUUGCUC - 25
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4048-3p

• Accession: MIMAT0016586
• Description: Ciona intestinalis cin-miR-4048-3p mature miRNA
• Sequence: 38 - GCAGUACUGGAGACAGGUGG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39