miRBase entry: cin-mir-4045

Stem-loop cin-mir-4045


Accession
MI0015596
Description
Ciona intestinalis cin-mir-4045 precursor miRNA


Sequence

153788 reads, 6088.0 reads per million, 9 experiments
CCACAAUGAAAGUAGAUGUCCGUUggccauaaaCGGGAUCACUAUCAUUGUGA
.((((((((.(((.(((.((((((.......)))))))))))).)))))))).

Structure
C        A   A   G      gg 
 CACAAUGA AGU GAU UCCGUU  c
 |||||||| ||| ||| ||||||  c
 GUGUUACU UCA CUA GGGCaa  a
A        A   -   -      au 


Annotation confidence High
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Genome context
ref|NW_004190427.1|: 43955-44007 [+]

Database links

Mature cin-miR-4045-5p

Accession MIMAT0016579
Description Ciona intestinalis cin-miR-4045-5p mature miRNA
Sequence 1 - CCACAAUGAAAGUAGAUGUCCGUU - 24
Evidence experimental
Illumina [1]

Mature cin-miR-4045-3p

Accession MIMAT0016580
Description Ciona intestinalis cin-miR-4045-3p mature miRNA
Sequence 34 - CGGGAUCACUAUCAUUGUGA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39