miRBase entry: cin-mir-4043

Stem-loop cin-mir-4043


Accession
MI0015594
Description
Ciona intestinalis cin-mir-4043 precursor miRNA


Sequence

143980 reads, 15406.0 reads per million, 9 experiments
CGUUCAGUCAUUCUAUGCAUACgugcuauaccgguUUGCAUAGAUUGUCCGAACA
.((((.(.((.((((((((.((...........)).)))))))).)).).)))).

Structure
C    A U  U        U  gugc 
 GUUC G CA UCUAUGCA AC    u
 |||| | || |||||||| ||    a
 CAAG C GU AGAUACGU ug    u
A    C U  U        U  gcca 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_020179.1|: 1118680-1118734 [-]

Database links

Mature cin-miR-4043-5p

Accession MIMAT0016575
Description Ciona intestinalis cin-miR-4043-5p mature miRNA
Sequence 1 - CGUUCAGUCAUUCUAUGCAUAC - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4043-3p

Accession MIMAT0016576
Description Ciona intestinalis cin-miR-4043-3p mature miRNA
Sequence 36 - UUGCAUAGAUUGUCCGAACA - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39