Stem-loop cin-mir-4038

Accession

MI0015589

Description

Ciona intestinalis cin-mir-4038 precursor miRNA

Sequence

10516 reads, 3625 reads per million, 2 experiments

CGGUCAAUACCAGAUGCAAAucaaguucaauguugCAUUGCACUGUUAUUGAUCU
.((((((((.(((.(((((..(((........)))..)))))))).)))))))).

Structure

C        C   A     Au   guu 
 GGUCAAUA CAG UGCAA  caa   c
 |||||||| ||| |||||  |||    
 CUAGUUAU GUC ACGUU  guu   a
U        U   -     AC   gua 

Annotation confidence Not enough data

Genome context

1p: 2634947-2635001 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-4038

Mature cin-miR-4038-5p

• Accession: MIMAT0016565
• Description: Ciona intestinalis cin-miR-4038-5p mature miRNA
• Sequence: 1 - CGGUCAAUACCAGAUGCAAA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4038-3p

• Accession: MIMAT0016566
• Description: Ciona intestinalis cin-miR-4038-3p mature miRNA
• Sequence: 36 - CAUUGCACUGUUAUUGAUCU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39