Stem-loop cin-mir-4022

Accession

MI0015573

Description

Ciona intestinalis cin-mir-4022 precursor miRNA

Sequence

16 reads, 5.0 reads per million, 2 experiments

uguauaagagucauuguuaauuguucauuuuuuAAUAUGAGUUUAUAUUUACA
.(((((((..((((.(((((...........))))))))).))))))).....

Structure

----u       ag    u     uugu 
     guauaag  ucau guuaa    u
     |||||||  |||| |||||    c
     UAUAUUU  AGUA UAAuu    a
ACAUU       -G    -     uuuu 

Annotation confidence Not enough data

Genome context

ref|NC_020169.1|: 2742450-2742502 [-]

Mature cin-miR-4022-3p

• Accession: MIMAT0016537
• Description: Ciona intestinalis cin-miR-4022-3p mature miRNA
• Sequence: 34 - AAUAUGAGUUUAUAUUUACA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39